BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB003A01SP1|AL425047
(995 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig602 808 0.0
3x_Contig1159 197 5e-50
3x_Contig1752 147 4e-35
3x_Contig356 127 4e-29
>3x_Contig602
Length = 2648
Score = 808 bits (407), Expect = 0.0
Identities = 408/409 (99%)
Strand = Plus / Plus
Query: 587 tacaacatattccaatgctatctttgttactatctgttttccatagacatagattcgtct 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacaacatattccaatgctatctttgttactatctgttttccatagacatagattcgtct 60
Query: 647 tcaatgatgcaataattgcccggttcttactagtcaggtgttgatgctcagagataagaa 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcaatgatgcaataattgcccggttcttactagtcaggtgttgatgctcagagataagaa 120
Query: 707 cgaaacattatcaaagaatttatttcgaagttataaagaactctgataagaaatatacat 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgaaacattatcaaagaatttatttcgaagttataaagaactctgataagaaatatacat 180
Query: 767 ggtcaactgcagtataatgagacctaccgcccatcactataattttcaggtgtaaacgga 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtcaactgcagtataatgagacctaccgcccatcactataattttcaggtgtaaacgga 240
Query: 827 attaagcagtcattgccaatatgggtcttcttactaccaatgggatgcttatcatcgatg 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 attaagcagtcattgccaatatgggtcttcttactaccaatgggatgcttatcatcgatg 300
Query: 887 agatcgagacggcgtcatcgcactattacgacgtactaggtggaggtgggacgtatgcca 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agatcgagacggcgtcatcgcactattacgacgtactaggtggaggtgggacgtatgcca 360
Query: 947 tgttaggcgcatcaatatgctgtactgacctatctctgcgcaaggmact 995
||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 361 tgttaggcgcatcaatatgctgtactgacctatctctgcgcaaggaact 409
>3x_Contig1159
Length = 4873
Score = 197 bits (99), Expect = 5e-50
Identities = 100/101 (99%)
Strand = Plus / Minus
Query: 1 gatcatattgtatccacaaaataccattggtatcattttcatttattttatattcyccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 101 gatcatattgtatccacaaaataccattggtatcattttcatttattttatattccccag 42
Query: 61 gctacttctacatattccaagtcaaacacgtaacaagacct 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 gctacttctacatattccaagtcaaacacgtaacaagacct 1
>3x_Contig1752
Length = 22471
Score = 147 bits (74), Expect = 4e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 408 aatagcgccgctcggtttcgatccgaggacatcagggttatgagccctgcgcgcttccac 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15784 aatagcgccgctcggtttcgatccgaggacatcagggttatgagccctgcgcgcttccac 15843
Query: 468 tgcgccacggcgct 481
||||||||||||||
Sbjct: 15844 tgcgccacggcgct 15857
>3x_Contig356
Length = 1664
Score = 127 bits (64), Expect = 4e-29
Identities = 70/72 (97%)
Strand = Plus / Minus
Query: 410 tagcgccgctcggtttcgatccgaggacatcagggttatgagccctgcgcgcttccactg 469
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 tagcggcgctcggtttcgatccgaggacatcagggttatgagccctgcgcgcttccactg 901
Query: 470 cgccacggcgct 481
||||||| ||||
Sbjct: 900 cgccacgccgct 889
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7190
Number of Sequences: 1807
Number of extensions: 7190
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 4
length of query: 995
length of database: 10,358,551
effective HSP length: 16
effective length of query: 979
effective length of database: 10,329,639
effective search space: 10112716581
effective search space used: 10112716581
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.8 bits)